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Latest publications

  • Extended-spectrum beta-lactamase, AmpC, and carbapenemase-producing Gram-negative wastewater isolates from Aotearoa New Zealand

    Published Papers
    Issue date:

    Christina Straub, Louise Weaver, Angela J. Cornelius, Erin McGill, Kristin Dyet, Isabelle Pattis. 

    ASM Journals Microbiology Resource Announcements. 

    https://journals.asm.org/doi/full/10.1128/mra.00131-24

  • A population genomics analysis of the Aotearoa New Zealand endemic rewarewa tree (Knightia excelsa)

    Published Papers
    Issue date:

     Ann M. McCartney, Emily Koot, Jessica M. Prebble, Rubina Jibran, Caroline Mitchell, Ana Podolyan, Alexander J. Fergus, Elise Arnst, Katie E. Herron, Gary Houliston, Thomas R. Buckley & David Chagné. 

    npj Biodiversity volume 3, Article number: 7 (2024).

    https://www.nature.com/articles/s44185-024-00038-6

  • Rapid dissemination of host metabolism–manipulating genes via integrative and conjugative elements

    Published Papers
    Issue date:

    Elena Colombi, Frederic Bertels, Guilhem Doulcier, Ellen McConnell, Tatyana Pichugina, Kee Hoon Sohn, Christina Straub, Honour C. McCann, and Paul B. Rainey. 

    PNAS 121 (11) e2309263121

    https://www.pnas.org/doi/abs/10.1073/pnas.2309263121
     

  • High niche specificity and host genetic diversity of groundwater viruses

    Published Papers
    Issue date:

    Emilie Gios, Olivia E Mosley, Michael Hoggard, Kim M Handley. 
    The ISME Journal, wrae035.

    https://academic.oup.com/ismej/article/18/1/wrae035/7624066

  • Genomic signals of local adaptation across climatically heterogenous habitats in an invasive tropical fruit fly (Bactrocera tryoni) 

    Published Papers
    Issue date:

    Parvizi E, Vaughan AL, Dhami MK, McGaughran A 
    Heredity, 1-12.
    https://www.nature.com/articles/s41437-023-00657-y

  • Current stewardship practices in invasion biology limit the value and secondary use of genomic data 

    Published Papers
    Issue date:

    Vaughan AL, Parvizi E, Matheson P, McGaughran A, Dhami MK 
    Molecular Ecology Resources
    https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.13858

  • Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics 

    Published Papers
    Issue date:

    Bailey, Sarah; Guhlin, Joseph; Senanayake, Dinindu S.; Scherer, Phoebe; Brekke, Patricia; Ewen, John G.; Santure, Anna W.; Whibley, Annabel    

    Molecular Ecology Resources
    https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.13823

  • Capturing species‐wide diversity of the gut microbiota and its relationship with genomic variation in the critically endangered kākāpō    

    Published Papers
    Issue date:

    West, Annie G.; Digby, Andrew; Santure, Anna W.; Guhlin, Joseph G.; Dearden, Peter; Team, Kākāpō Recovery; Taylor, Michael W.; Urban, Lara    
    Molecular Ecology
    https://onlinelibrary.wiley.com/doi/10.1111/mec.16999

  • Formalin fixed paraffin embedded (FFPE) samples help to investigate transcriptomic responses in wildlife disease

    Published Papers
    Issue date:

    Miller, Allison K.; Brosnahan, Cara L.; Pande, Anjali; Baker, Cindy F.; Geoghegan, Jemma L.; Kitson, Jane; Gemmell, Neil J.; Dowle, Edwina J.
    Molecular Ecology Resources
    https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.13805

  • Rapid dissemination of host-metabolism-manipulating transposon-like entities via integrative and conjugative elements    

    Published Papers
    Issue date:

    Colombi, Elena; Bertels, Frederic; Doulcier, Guilhem; McConnell, Ellen; Pichugina, Tatyana; Sohn, Kee Hoon; Straub, Christina; McCann, Honour; Rainey, Paul B.    
    bioRxiv
    https://www.biorxiv.org/content/10.1101/2023.04.24.538000v1

  • Transcriptomic identification of differentially expressed genes in Levonorgestrel resistant endometrial cancer cell lines

    Published Papers
    Issue date:

    Dore, Molly; Faya, Ngonidzashe; Filoche, Sara; Henry, Claire    
    Molecular Carcinogenesis
    https://onlinelibrary.wiley.com/doi/10.1002/mc.23544

  • GALBA: Genome Annotation with Miniprot and AUGUSTUS  

    Published Papers
    Issue date:

    Brůna, Tomáš; Li, Heng; Guhlin, Joseph; Honsel, Daniel; Herbold, Steffen; Stanke, Mario; Nenasheva, Natalia; Ebel, Matthis; Gabriel, Lars; Hoff, Katharina J.    
    bioRxiv
    https://www.biorxiv.org/content/10.1101/2023.04.10.536199v1

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